sith.g09\_stretching package
============================

Subpackages
-----------

.. toctree::
   :maxdepth: 4

   sith.g09_stretching.from_extreme

Submodules
----------


.. automodule:: sith.g09_stretching.change_dofs
   :members:
   :undoc-members:
   :show-inheritance:


.. automodule:: sith.g09_stretching.g09_xyz
   :members:
   :undoc-members:
   :show-inheritance:


.. automodule:: sith.g09_stretching.protonate
   :members:
   :undoc-members:
   :show-inheritance:


.. automodule:: sith.g09_stretching.sith_tools
   :members:
   :undoc-members:
   :show-inheritance:

Module contents
---------------

.. automodule:: sith.g09_stretching
   :members:
   :undoc-members:
   :show-inheritance:

.. toctree::
   :hidden:

   bash_rsts_scripts/restart_g09
   bash_rsts_scripts/simplify_path
   bash_rsts_scripts/workflow
   bash_rsts_scripts/find_forces
   bash_rsts_scripts/proline_mod
   bash_rsts_scripts/extract_forces
   bash_rsts_scripts/create_peptide
   bash_rsts_scripts/swap_atoms_in_com
   bash_rsts_scripts/stretching


.. _sith-g09-stretching-stretching:

.. include:: bash_rsts_doc/stretching.rst

.. _sith-g09-stretching-swap-atoms-in-com:

.. include:: bash_rsts_doc/swap_atoms_in_com.rst

.. _sith-g09-stretching-create-peptide:

.. include:: bash_rsts_doc/create_peptide.rst

.. _sith-g09-stretching-extract-forces:

.. include:: bash_rsts_doc/extract_forces.rst

.. _sith-g09-stretching-proline-mod:

.. include:: bash_rsts_doc/proline_mod.rst

.. _sith-g09-stretching-find-forces:

.. include:: bash_rsts_doc/find_forces.rst

.. _sith-g09-stretching-workflow:

.. include:: bash_rsts_doc/workflow.rst

.. _sith-g09-stretching-simplify-path:

.. include:: bash_rsts_doc/simplify_path.rst

.. _sith-g09-stretching-restart-g09:

.. include:: bash_rsts_doc/restart_g09.rst