KIMMDY
Getting Started
How-To
Tutorials
Explanations
Reference
Source Code
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Reference
Python API
Topology
parsing.TopologyDict
KIMMDY
Tutorials
Run KIMMDY from Colbuilder fibril
Get Started
Modify a Topology
Write a Reaction Plugin
How-To
Analyze a KIMMDY run
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Examples
High Performance Computing
Install Machine Learning Plugins
Reaction only
Explanation
Components of KIMMDY
Visualize Topologies
Reference
Input File
CLI Arguments
Python API
cmd
Topology
topology.topology
topology.ff
topology.utils
topology.atomic
parsing.TopologyDict
Reaction Plugins
homolysis.reaction.Homolysis
hat_naive.reaction.NaiveHAT
dummyreaction.reaction.DummyReaction
Other Modules
constants
coordinates
config
kmc
parsing
runmanager
tasks
recipe
plugins
analysis
utils
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parsing.TopologyDict
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parsing.TopologyDict
parsing.TopologyDict
A raw representation of a topology file returned by
read_top
.
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topology.atomic
homolysis.reaction.Homolysis